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Design layer · sequences · primers · assemblies · controlled release

Move from molecular design to approved laboratory execution

Manage sequences, versions, primers, PCR context, assemblies, review, and release in a molecular workspace that stays connected to the physical and operational laboratory.

FlaskTrack Molecular Studio links design intent to plasmids, protocols, workflows, samples, files, approvals, and downstream execution so sequence work does not end at an exported file.

Versioned recordsProtocols, scientific entities, files, and controlled releases
Live executionScheduled work, batches, samples, roles, and operational events
Instrument dataLocal ingestion, mapping, provenance, review, and downstream use
Data pipelinesSQL, reports, Python/R transforms, APIs, and analytical storage
Built-in governancePermissions, signatures, audit history, review, and validation support
Start a Team Workspace Explore Plasmid Catalogs Connect to Workflows

Move from sequence files to controlled molecular projects

Molecular Studio provides a structured workspace for designing and reviewing plasmids and other DNA constructs without separating molecular design from the laboratory operations that will build, verify, and use them.

Molecular Projects Group working sequences, source material, references, assembly inputs, and assembly outputs within a defined design project.
DNA Sequence Import Import FASTA, GenBank, or plain DNA sequence content and keep the original design context within a controlled organizational record.
Sequence Version History Preserve prior versions while changes continue, making it easier to review how a construct evolved and which version was approved.
Identity & Functional Metadata Capture construct names, aliases, backbone, insert, promoter, terminator, origin, markers, reporters, host context, and intended function.

Design assemblies with the method your laboratory uses

Define assembly plans from controlled sequence versions, preserve the role and order of each fragment, and connect the design to the primers and procedures needed to turn it into laboratory work.

Assembly Inputs & Outputs Identify source fragments, reference sequences, working intermediates, and intended outputs without losing their version-specific relationships.
Multiple Assembly Methods Document digest-and-ligate, Gibson, Golden Gate, PCR, concatenation, site-directed mutagenesis, and custom assembly approaches.
Fragment Orientation & Order Preserve how each fragment participates in the assembly design so teams can review the intended construct before execution.
Operational Handoff Carry approved molecular context into protocols and workflows for cloning, transformation, screening, verification, and downstream use.

Manage primers as part of the design record

Primer Records Store primer sequences, names, notes, and design context instead of leaving them scattered across spreadsheets and messages.
Primer Pairs Associate forward and reverse primers as a pair and preserve their relationship to the sequence, assembly, and intended procedure.
Purpose-Specific Context Distinguish PCR, qPCR, sequencing, Gibson, Golden Gate, restriction cloning, mutagenesis, screening, and custom primer uses.
Verification Status Record review and verification state so users can distinguish exploratory designs from primers that have been checked for use.

Review, approve, and release the correct sequence

Design work changes rapidly, but operational teams need a clear answer to a simple question: which sequence is approved for use? Molecular Studio separates editable working versions from the released sequence snapshot associated with the cataloged plasmid record.

Working Versions Continue iterating on sequence designs without silently replacing the version currently referenced by downstream laboratory operations.
Human Review Review sequence, assembly, primer, and metadata changes before a molecular design is treated as approved operational context.
Controlled Approval Actions Use permissions, review actions, electronic signatures where configured, and audit history to document important molecular decisions.
Released Catalog Sequence Publish the approved sequence version to the plasmid catalog so workflows and users reference a defined released snapshot.

Connect molecular design to the rest of the laboratory

Plasmid Catalogs Link released sequences to plasmid identity, selectable markers, reporters, host range, topology, resistance, function, and catalog metadata.
Protocols & Workflows Reference approved constructs and molecular context in repeatable procedures for assembly, transformation, screening, culture, and analysis.
Samples & Batches Follow constructs into execution records, samples, batches, verification results, lineage, and downstream experimental use.
Electronic Laboratory Notebook Discuss design rationale and experimental outcomes while linking notebook entries to governed sequences, plasmids, workflows, and samples.

AI-assisted molecular design scaffolding

Use organizationally configured AI to prepare a draft molecular project structure from a design objective and available context. Generated content remains a starting point for review rather than a substitute for sequence validation or scientific judgment.

Start From a Design Goal Describe the intended construct, components, function, host context, or assembly objective in practical laboratory language.
Generate a Draft Scaffold Prepare an editable project outline, component structure, metadata suggestions, or assembly starting point for human review.
Organization-Controlled AI Use the AI provider and model configured by your organization, including supported hosted or privately operated model options.
Review Before Release Validate all generated sequences, primers, assemblies, and claims before approval, laboratory execution, or publication to the catalog.

A connected molecular design workspace

  • ✔ Molecular projects containing working, source, reference, input, and output sequences
  • ✔ DNA sequence import from FASTA, GenBank, and plain sequence content
  • ✔ Version-controlled sequence history and released sequence snapshots
  • ✔ Plasmid identity, topology, markers, resistance, host range, function, and design metadata
  • ✔ Assembly planning for common cloning methods and custom workflows
  • ✔ Primer records, primer pairs, intended purpose, and verification status
  • ✔ Review, approval, publishing, electronic-signature, and audit context where configured
  • ✔ Connections to catalogs, protocols, workflows, samples, batches, files, and notebook entries
Buyer evaluation

Validate the molecular workflow with representative designs

Sequence software should be evaluated against the laboratory’s actual design, review, primer, assembly, and release process.

Design methods

Test the assembly methods, sequence formats, annotations, primer purposes, and topology conventions your team uses.

Release control

Confirm how working versions become reviewed and released records and how downstream work references the approved sequence.

External verification

Continue using appropriate scientific review and independent sequence or primer validation before physical execution.

Keep molecular design connected to laboratory reality

FlaskTrack Molecular Studio brings design records and operational records together. Teams can move from a working DNA sequence to a reviewed construct, released catalog item, executable procedure, and traceable experimental result without rebuilding context in separate tools.

Start a Team Workspace Explore Plasmid Catalogs Explore AI Assistance
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